![]() Compilation completed without error, and I added the bin, include, and lib directories to PATH, CPATH, and LD_LIBRARY_PATH, respectively. This is right at the edge of my knowledge, so I'm not 100% sure I got libiconv installed correctly. See also "/clusterfs/vector/home/groups/software/sl-7.x86_64/source/salmon/1.5.1/CMakeFiles/CMakeError.log". If it is in that list, then it should be assumed that the package will be added to the project directly via addsubdirectory () and the find. See also "/clusterfs/vector/home/groups/software/sl-7.x86_64/source/salmon/1.5.1/CMakeFiles/CMakeOutput.log". The intent behind the above block of CMake code is to redefine the built-in findpackage () command such that it checks if the package to be found is one of those named in the assubproject list variable. On Mac, it’s included with the Xcode command line tools, whereas on Windows, you must manually install it. On Linux, make is often preinstalled or included with package sets like build-essential. if ((NOT BoostFOUND) AND (NOT FETCHBOOST)) message (FATALERROR 'Salmon cannot be compiled without Boost. use OpenSSL wrapper dependency for CMake 3.18.4 with system toolchain. The Make Command Not Found error indicates that the make utility is either not installed on the system or it’s not present in the PATH variable. Configuring incomplete, errors occurred! MPI easyblock to fix paths not being found on Linux distros favouring lib64 (like. global/home/groups/consultsw/sl-7.x86_64/modules/cmake/3.15.1/share/cmake-3.15/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE) Performing Test Iconv_IS_BUILT_IN - FailedĬMake Error at /global/home/groups/consultsw/sl-7.x86_64/modules/cmake/3.15.1/share/cmake-3.15/Modules/FindPackageHandleStandardArgs.cmake:137 (message):Ĭould NOT find Iconv (missing: Iconv_LIBRARY) Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") This only comes from cygwin: make2: Entering directory > /cygdrive/e/workspace/GSDesignGUI/package. Inflating: /clusterfs/vector/home/groups/software/sl-7.x86_64/source/salmon/1.5.1/scripts/./external/pufferfish-salmon-v1.5.1/tests/compile_tests/int128_numeric_limits.cpp Somehow, you have a cygwin make getting involved. Reply to this email directly, view it on GitHubĬreating: /clusterfs/vector/home/groups/software/sl-7.x86_64/source/salmon/1.5.1/scripts/./external/pufferfish-salmon-v1.5.1/tests/compile_tests/ You are receiving this because you were mentioned. Linux distributions available under our releases Also, we have a pre-compiled binary that should work on many Salmon is available via Bioconda, and a docker image is available viaĭockerHub. Internally and on ourĬontinuous integration servers, we use version 3.15.Īlso, I'll mention that it may not be essential to build from source. Source, you should have at least CMake version 3.12. Version of CMake that ships with FindIConv.cmake. ![]() This is because, to properly find and link libiconv, the build requires a
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